Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015814441.1_cds_XP_016497937.1_12020
CDS Infomation

[gene=LOC107816706] [db_xref=GeneID:107816706] [protein=protein ROOT HAIR DEFECTIVE 3 homolog 2-like isoform X3] [protein_id=XP_016497937.1] [location=join(43166..43180,47705..47775,48354..48417,48493..48558,48662..48709,48848..48910,49041..49097,49223..49381,49464..49532,49609..49700,51154..51232,52814..52979,55806..55930,56080..56342,56420..56516,56628..56789,56869..56973,58451..58545,58621..58795)] [gbkey=CDS]
Sequence

ATGGAAGAGAGAGGGGACGATACAACATTCGAGAAACAAAGTGCGTTGTTTGCTTTGGCT
GTTGCAGATGTCGTACTAATAAACATGTGGTGCCATGATATTGGCAGGGAGCAGGCTGCC
AATAAACCTCTTCTCAAAACAGTATTTCAGGTCATGATGCGTTTGTTTAGTCCACGCAAA
ACTACCCTTCTTTTTGTTATACGTGATAAAACGAAGACTCCACTAGAATATCTTGAGCCT
ATTCTGAGGGAGGATATCCAGAAGATATGGGATGGAGTTCGAAAGCCTCAAGCACACAAG
GACACCCCCCTCAGTGAATTTTTCAATGTAGAAGTCACTGCCCTACCCAGTTACGAGGAG
AAGGAAGAGCAGTTTAAAAATCAGGTTGCCCAACTTAGGCAGCAGTTTTTCCACTCTATC
TCTCCAGGAGGCCTGGCTGGTGATAGGCGGGGTGTTGTTCCTGCCTCTGGTTTTTCTTAC
AGTGCACAGCAAATATGGAAGGTTATCAAAGAAAACAAGGACCTCGACTTGCCTGCTCAC
AAGGTCATGGTGGCAACTGTGCGTTGTGAAGAAATTGCAAATGAGAAGTTCGGTAGCTTG
ATGATAAATGAGGACTGGCGAGCTCTCGAGCATGAAGTGCATGAGGATGCGGTTCGAAAT
TTTGGAAGACGACTGAGCTCCATCTTAGATGACTTTCTGTCAGAATATGATGCTGAGTCT
GTCTTCTTTGAAGAAAATGTGAGAAGTTTAAAACGTCAACAGTTTCTATCGAAAGCTTTG
CAATTGGTCCATCCTGCTTTCATTTCACAGTTGGGGCATCTACGTGATAAATCGCTTGAA
GCATTTAAGACTCAGCTGGAACAATCATTACGCAGAGGAGAAGCATTTGCTGCATCTGTT
CGTAAATGTGCCGACTCTACTATAATTGAATTTGATAAAGGATGTTCAGATGCCGCCGTA
AGACATGCTAATTGGGATGCTTCAAAAGTTCGTGACAAACTTCATCGTGATATTGAGGCC
CATGCATCCTCTGTTCGTAATGATAAGTTGTCCAATCTGAAGGCTACTTATGAGAAACAA
ATCACAGCTGCACTTGCTGAACCCATAGAATCCCTTTTTGAGGTTGGGGGGAGTGACACA
TGGGCTTCAATAAGAAAGCTTCTAAAACGCGAGACTGATGTGGCCATATCGTGCTTCTCC
CCGGCTCTTTCCGGCTTTGAGTTGGACCAGGATACATTTGACAGAATGATGCAAAATCTG
AAGGACTACGCTAGAAGTGTTGTAGAGAAGAAAGCAAGAGAAGAAGCTGGAAAAGTTTTG
ATGCGAATGAAGGATAGGTTTAATACTGTGTTCAGCCATGATAGTGACTCAATGCCAAGG
CTTTGGACAGGGAAGGAGGACATTAAATCAATAACAAAGGAGTCCCGCTCTGAGTCTCTG
AAGCTTTTATCCGTAGTGGCTGCCATACGGTTGGATGAAAAACCAGACAGAATAGAAAGC
ATACTTTTTTCTAGACTCTTGGAAGGGACATTTTCAATTCGGGATAGGGATCGTGGAGAT
TCTGGTGATCCTCTTGCCTCAAGCTCATGGGAAGAGGTTTCACGAGAGAACACATTGCTC
ACACCAGTGCAGTGCAAATCGTTGTGGAGGCAATTCATGGCAGAAACAGAGTATACTGTT
ACTCAAGCTATTTCAGCACAGGAAGCATACAGGCAAAGCAATAATTTGTTACCTCCTGCC
TGGGCTATAATGGCTATGATTATACTCGGTTTCAACGAATTCATGCTTCTTTTAAGAAAT
CCGCTCTACCTCTTGGTGCTTTTTGTTGTATATTTGTTAGGGAAAGCTCTGTGGGTACAA
ATGAACATTCCTGGGGAGTTCCGAAATGGCATTGTGAGTAAAATAGCTGTTCCTTGTTTT
CATTTATGGCTTTACTCTTTTCCTGAGCTTAAGATAGGTTGTTTGAACTAA

Peptide Sequence

PEP ID

XP_016497937.1
PEP Infomation

PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like isoform X3 [Nicotiana tabacum]
Sequence

MEERGDDTTFEKQSALFALAVADVVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK
TTLLFVIRDKTKTPLEYLEPILREDIQKIWDGVRKPQAHKDTPLSEFFNVEVTALPSYEE
KEEQFKNQVAQLRQQFFHSISPGGLAGDRRGVVPASGFSYSAQQIWKVIKENKDLDLPAH
KVMVATVRCEEIANEKFGSLMINEDWRALEHEVHEDAVRNFGRRLSSILDDFLSEYDAES
VFFEENVRSLKRQQFLSKALQLVHPAFISQLGHLRDKSLEAFKTQLEQSLRRGEAFAASV
RKCADSTIIEFDKGCSDAAVRHANWDASKVRDKLHRDIEAHASSVRNDKLSNLKATYEKQ
ITAALAEPIESLFEVGGSDTWASIRKLLKRETDVAISCFSPALSGFELDQDTFDRMMQNL
KDYARSVVEKKAREEAGKVLMRMKDRFNTVFSHDSDSMPRLWTGKEDIKSITKESRSESL
KLLSVVAAIRLDEKPDRIESILFSRLLEGTFSIRDRDRGDSGDPLASSSWEEVSRENTLL
TPVQCKSLWRQFMAETEYTVTQAISAQEAYRQSNNLLPPAWAIMAMIILGFNEFMLLLRN
PLYLLVLFVVYLLGKALWVQMNIPGEFRNGIVSKIAVPCFHLWLYSFPELKIGCLN

Transcript Sequence

Gene sequence data has not been registered.